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1

The Origin and Diversification of Mitochondria

Roger, Andrew J., Muñoz-Gómez, Sergio A., Kamikawa, Ryoma

Journal:

Current Biology

Année:

2017

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2017

2

Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group.

Brown, Matthew W, Heiss, Aaron A, Kamikawa, Ryoma, Inagaki, Yuji, Yabuki, Akinori, Tice, Alexander K, Shiratori, Takashi, Ishida, Ken-ichiro, Hashimoto, Tetsuo, Simpson, Alastair G B, Roger, Andrew J

Journal:

Genome Biology and Evolution

Année:

2018

Langue:

english

Fichier:

PDF, 456 KB

english, 2018

3

Diversity of Organellar Genomes in Non-photosynthetic Diatoms

Kamikawa, Ryoma, Azuma, Tomonori, Ishii, Ken-ichiro, Matsuno, Yusei, Miyashita, Hideaki

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 829 KB

english, 2018

4

Expanded phylogenies of canonical and non-canonical types of methionine adenosyltransferase reveal a complex history of these gene families in eukaryotes

Ryoma Kamikawa, Gabino F. Sanchez-Perez, Yoshihiko Sako, Andrew J. Roger, Yuji Inagaki

Journal:

Molecular Phylogenetics and Evolution

Année:

2009

Langue:

english

Fichier:

PDF, 299 KB

english, 2009

5

Rooting for the root of elongation factor-like protein phylogeny

Ryoma Kamikawa, Miako Sakaguchi, Takuya Matsumoto, Tetsuo Hashimoto, Yuji Inagaki

Journal:

Molecular Phylogenetics and Evolution

Année:

2010

Langue:

english

Fichier:

PDF, 421 KB

english, 2010

6

Development of a novel molecular marker on the mitochondrial genome of a toxic dinoflagellate,Alexandriumspp., and its application in single-cell PCR

Ryoma Kamikawa, Shoko Hosoi-Tanabe, Sadaaki Yoshimatsu, Kenichi Oyama, Isao Masuda, Yoshihiko Sako

Journal:

Journal of Applied Phycology

Année:

2008

Langue:

english

Fichier:

PDF, 178 KB

english, 2008

7

A novel spliceosome-mediatedtrans-splicing can change our view on genome complexity of the divergent eukaryoteGiardia intestinalis

Ryoma Kamikawa, Yuji Inagaki, Tetsuo Hashimoto

Journal:

Biophysical Reviews

Année:

2011

Langue:

english

Fichier:

PDF, 376 KB

english, 2011

8

Genetic diversity of Gambierdiscus spp. (Gonyaulacales, Dinophyceae) in Japanese coastal areas

Sotaro Kuno, Ryoma Kamikawa, Sadaaki Yoshimatsu, Takefumi Sagara, Sachio Nishio, Yoshihiko Sako

Journal:

Phycological Research

Année:

2010

Langue:

english

Fichier:

PDF, 328 KB

english, 2010

9

Analysis of the mitochondrial genome, transcripts, and electron transport activity in the dinoflagellate Alexandrium catenella (Gonyaulacales, Dinophyceae)

Ryoma Kamikawa, Hiroshi Nishimura, Yoshihiko Sako

Journal:

Phycological Research

Année:

2009

Langue:

english

Fichier:

PDF, 317 KB

english, 2009

10

Development of a quantification assay for the cysts of the toxic dinoflagellateAlexandrium tamarenseusing real-time polymerase chain reaction

Ryoma KAMIKAWA, Shoko HOSOI-TANABE, Satoshi NAGAI, Shigeru ITAKURA, Yoshihiko SAKO

Journal:

Fisheries Science

Année:

2005

Langue:

english

Fichier:

PDF, 146 KB

english, 2005

11

Genetic variation in mitochondrial genes and intergenic spacer region in harmful algaeChattonellaspecies

Ryoma KAMIKAWA, Isao MASUDA, Kenichi OYAMA, Sadaaki YOSHIMATSU, Yoshihiko SAKO

Journal:

Fisheries Science

Année:

2007

Langue:

english

Fichier:

PDF, 673 KB

english, 2007

12

Split Introns in the Genome of Giardia intestinalis Are Excised by Spliceosome-Mediated trans-Splicing

Ryoma Kamikawa, Yuji Inagaki, Masaharu Tokoro, Andrew J. Roger, Tetsuo Hashimoto

Journal:

Current Biology

Année:

2011

Langue:

english

Fichier:

PDF, 350 KB

english, 2011

13

Cercozoa comprises both EF-1α-containing and EFL-containing members

Ryoma Kamikawa, Akinori Yabuki, Takuro Nakayama, Ken-ichiro Ishida, Tetsuo Hashimoto, Yuji Inagaki

Journal:

European Journal of Protistology

Année:

2011

Langue:

english

Fichier:

PDF, 403 KB

english, 2011

14

Fragmentation of Mitochondrial Large Subunit rRNA in the Dinoflagellate Alexandrium catenella and the Evolution of rRNA structure in Alveolate Mitochondria

Ryoma Kamikawa, Yuji Inagaki, Yoshihiko Sako

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 230 KB

english, 2007

15

Mitochondrial Group II Introns in the Raphidophycean Flagellate Chattonella spp. Suggest a Diatom-to-Chattonella Lateral Group II Intron Transfer

Ryoma Kamikawa, Isao Masuda, Mikihide Demura, Kenichi Oyama, Sadaaki Yoshimatsu, Masanobu Kawachi, Yoshihiko Sako

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 1003 KB

english, 2009

16

Evolution of Elongation Factor-Like (EFL) Protein in Rhizaria is Revised by Radiolarian EFL Gene Sequences

Yoshiyuki Ishitani, Ryoma Kamikawa, Akinori Yabuki, Masashi Tsuchiya, Yuji Inagaki, Kiyotaka Takishita

Journal:

Journal of Eukaryotic Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 549 KB

english, 2012

17

Mitochondrial genomes from two red tide forming raphidophycean algae Heterosigma akashiwo and Chattonella marina var. marina

Isao Masuda, Ryoma Kamikawa, Manabu Ueda, Kenichi Oyama, Sadaaki Yoshimatsu, Yuji Inagaki, Yoshihiko Sako

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 456 KB

english, 2011

18

Application of real-time PCR assay for detection and quantification of Alexandrium tamarense and Alexandrium catenella cysts from marine sediments

Ryoma Kamikawa, Satoshi Nagai, Shoko Hosoi-Tanabe, Shigeru Itakura, Mineo Yamaguchi, Yoshitaka Uchida, Toshinori Baba, Yoshihiko Sako

Journal:

Année:

2007

Langue:

english

Fichier:

PDF, 218 KB

english, 2007

19

Parallel re-modeling of EF-1α function: divergent EF-1α genes co-occur with EFL genes in diverse distantly related eukaryotes

Ryoma Kamikawa, Matthew W Brown, Yuki Nishimura, Yoshihiko Sako…

Journal:

BMC Evolutionary Biology

Année:

2013

Langue:

english

Fichier:

PDF, 291 KB

english, 2013

20

Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista

Yabuki, Akinori, Kamikawa, Ryoma, Ishikawa, Sohta A., Kolisko, Martin, Kim, Eunsoo, Tanabe, Akifumi S., Kume, Keitaro, Ishida, Ken-ichiro, Inagki, Yuji

Journal:

Scientific Reports

Année:

2014

Langue:

english

Fichier:

PDF, 916 KB

english, 2014

21

Secondary loss of acis-spliced intron during the divergence ofGiardia intestinalisassemblages

Ryoma Kamikawa,Yuji Inagaki,Tetsuo Hashimoto

Journal:

BMC Research Notes

Année:

2014

Langue:

english

Fichier:

PDF, 403 KB

english, 2014

22

Multiple losses of photosynthesis in Nitzschia (Bacillariophyceae)

Kamikawa, Ryoma, Yubuki, Naoji, Yoshida, Masaki, Taira, Misaka, Nakamura, Noriaki, Ishida, Ken-ichiro, Leander, Brian S., Miyashita, Hideaki, Hashimoto, Tetsuo, Mayama, Shigeki, Inagaki, Yuji

Journal:

Phycological Research

Année:

2015

Langue:

english

Fichier:

PDF, 2.27 MB

english, 2015

23

An intronic open reading frame was released from one of group II introns in the mitochondrial genome of the haptophyte Chrysochromulina sp. NIES-1333

Nishimura, Yuki, Kamikawa, Ryoma, Hashimoto, Tetsuo, Inagaki, Yuji

Journal:

Mobile Genetic Elements

Année:

2014

Langue:

english

Fichier:

PDF, 1.62 MB

english, 2014

24

Proposal of a Twin Aarginine Translocator System-Mediated Constraint against Loss of ATP Synthase Genes from Nonphotosynthetic Plastid Genomes

Kamikawa, Ryoma, Tanifuji, Goro, Ishikawa, Sohta A., Ishii, Ken-Ichiro, Matsuno, Yusei, Onodera, Naoko T., Ishida, Ken-Ichiro, Hashimoto, Tetsuo, Miyashita, Hideaki, Mayama, Shigeki, Inagaki, Yuji

Journal:

Molecular Biology and Evolution

Année:

2015

Langue:

english

Fichier:

PDF, 881 KB

english, 2015

25

Discovery of PP i -type Phosphoenolpyruvate Carboxykinase Genes in Eukaryotes and Bacteria

Chiba, Yoko, Kamikawa, Ryoma, Nakada-Tsukui, Kumiko, Saito-Nakano, Yumiko, Nozaki, Tomoyoshi

Journal:

Journal of Biological Chemistry

Année:

2015

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2015

26

Group II Intron-Mediated Trans -Splicing in the Gene-Rich Mitochondrial Genome of an Enigmatic Eukaryote, Diphylleia rotans

Kamikawa, Ryoma, Shiratori, Takashi, Ishida, Ken-Ichiro, Miyashita, Hideaki, Roger, Andrew J.

Journal:

Genome Biology and Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 601 KB

english, 2016

27

Splintrons in Giardia intestinalis

Kamikawa, Ryoma, Inagaki, Yuji, Roger, Andrew J., Hashimoto, Tetsuo

Journal:

Communicative & Integrative Biology

Année:

2011

Langue:

english

Fichier:

PDF, 505 KB

english, 2011

28

Proposal of a Twin Aarginine Translocator System-Mediated Constraint against Loss of ATP Synthase Genes from Nonphotosynthetic Plastid Genomes

Kamikawa, Ryoma, Tanifuji, Goro, Ishikawa, Sohta A., Ishii, Ken-Ichiro, Matsuno, Yusei, Onodera, Naoko T., Ishida, Ken-Ichiro, Hashimoto, Tetsuo, Miyashita, Hideaki, Mayama, Shigeki, Inagaki, Yuji

Journal:

Molecular Biology and Evolution

Année:

2016

Langue:

english

Fichier:

PDF, 23 KB

english, 2016

29

The Distribution of a Phage-Related Insertion Sequence Element in the Cyanobacterium, Microcystis aeruginosa

Kuno, Sotaro, Yoshida, Takashi, Kamikawa, Ryoma, Hosoda, Naohiko, Sako, Yoshihiko

Journal:

Microbes and Environments

Année:

2010

Langue:

english

Fichier:

PDF, 459 KB

english, 2010

30

Application of a Real-time PCR Assay to a Comprehensive Method of Monitoring Harmful Algae

Kamikawa, Ryoma, Asai, Junko, Miyahara, Takahiro, Murata, Keisuke, Oyama, Kenichi, Yoshimatsu, Sadaaki, Yoshida, Takashi, Sako, Yoshihiko

Journal:

Microbes and Environments

Année:

2006

Langue:

english

Fichier:

PDF, 501 KB

english, 2006

31

Real-time PCR assay for monitoring harmful algae in aquatic environments

KAMIKAWA, RYOMA, SAKO, YOSHIHIKO

Journal:

NIPPON SUISAN GAKKAISHI

Année:

2007

Fichier:

PDF, 220 KB

2007

32

rRNA sequences reveal the genetic diversity of Gambierdiscus spp. distributing in the coastal area of Western-Japan

KAMIKAWA, RYOMA, SAKO, YOSHIHIKO

Journal:

NIPPON SUISAN GAKKAISHI

Année:

2008

Fichier:

PDF, 275 KB

2008

33

Multiple conversion between the genes encoding bacterial class-I release factors

Ishikawa, Sohta A., Kamikawa, Ryoma, Inagaki, Yuji

Journal:

Scientific Reports

Année:

2015

Langue:

english

Fichier:

PDF, 3.75 MB

english, 2015

34

Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes

Leger, Michelle M., Kolisko, Martin, Kamikawa, Ryoma, Stairs, Courtney W., Kume, Keitaro, Čepička, Ivan, Silberman, Jeffrey D., Andersson, Jan O., Xu, Feifei, Yabuki, Akinori, Eme, Laura, Zhang, Qianq

Journal:

Nature Ecology & Evolution

Année:

2017

Langue:

english

Fichier:

PDF, 830 KB

english, 2017

35

Symbiotic green algae in eggs of Hynobius nigrescens , an amphibian endemic to Japan

Muto, Kiyoaki, Nishikawa, Kanto, Kamikawa, Ryoma, Miyashita, Hideaki

Journal:

Phycological Research

Année:

2017

Langue:

english

Fichier:

PDF, 285 KB

english, 2017

36

Mitochondrial genome evolution and a novel RNA editing system in deep-branching heteroloboseids

Yang, Jiwon, Harding, Tommy, Kamikawa, Ryoma, Simpson, Alastair G. B., Roger, Andrew J.

Journal:

Genome Biology and Evolution

Année:

2017

Langue:

english

Fichier:

PDF, 1.68 MB

english, 2017

37

A non-photosynthetic diatom reveals early steps of reductive evolution in plastids

Kamikawa, Ryoma, Moog, Daniel, Zauner, Stefan, Tanifuji, Goro, Ishida, Ken-ichiro, Miyashita, Hideaki, Mayama, Shigeki, Hashimoto, Tetsuo, Maier, Uwe-G, Archibald, John M, Inagaki, Yuji

Journal:

Molecular Biology and Evolution

Année:

2017

Langue:

english

Fichier:

PDF, 4.74 MB

english, 2017

38

Fates of Evolutionarily Distinct, Plastid-type Glyceraldehyde 3-phosphate Dehydrogenase Genes in Kareniacean Dinoflagellates

Kamikawa, Ryoma, Yazaki, Euki, Tahara, Michiru, Sakura, Takaya, Matsuo, Eriko, Nagamune, Kisaburo, Hashimoto, Tetsuo, Inagaki, Yuji

Journal:

Journal of Eukaryotic Microbiology

Année:

2018

Langue:

english

Fichier:

PDF, 386 KB

english, 2018

39

Growth characterization of non-photosynthetic diatoms, Nitzschia spp., inhabiting estuarine mangrove forests of Ishigaki Island, Japan

Ishii, Ken-Ichiro, Kamikawa, Ryoma

Journal:

Plankton and Benthos Research

Année:

2017

Langue:

english

Fichier:

PDF, 661 KB

english, 2017

40

The Mitochondrial Genomes of a Myxozoan Genus Kudoa Are Extremely Divergent in Metazoa

Takeuchi, Fumihiko, Sekizuka, Tsuyoshi, Ogasawara, Yumiko, Yokoyama, Hiroshi, Kamikawa, Ryoma, Inagaki, Yuji, Nozaki, Tomoyoshi, Sugita-Konishi, Yoshiko, Ohnishi, Takahiro, Kuroda, Makoto, Sun, Genlou

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 3.95 MB

english, 2015

41

Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

Cenci, Ugo, Sibbald, Shannon J., Curtis, Bruce A., Kamikawa, Ryoma, Eme, Laura, Moog, Daniel, Henrissat, Bernard, Maréchal, Eric, Chabi, Malika, Djemiel, Christophe, Roger, Andrew J., Kim, Eunsoo, Arc

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 5.06 MB

english, 2018

42

Comparative plastid genomics of Cryptomonas species reveals fine-scale genomic responses to loss of photosynthesis

Tanifuji, Goro, Kamikawa, Ryoma, Moore, Christa E, Mills, Tyler, Onodera, Naoko T, Kashiyama, Yuichiro, Archibald, John M, Inagaki, Yuji, Hashimoto, Tetsuo, Piganeau, Gwenael

Journal:

Genome Biology and Evolution

Année:

2020

Langue:

english

Fichier:

PDF, 1.47 MB

english, 2020

43

Dinoflagellates with relic endosymbiont nuclei as models for elucidating organellogenesis

Sarai, Chihiro, Tanifuji, Goro, Nakayama, Takuro, Kamikawa, Ryoma, Takahashi, Kazuya, Yazaki, Euki, Matsuo, Eriko, Miyashita, Hideaki, Ishida, Ken-ichiro, Iwataki, Mitsunori, Inagaki, Yuji

Journal:

Proceedings of the National Academy of Sciences

Année:

2020

Langue:

english

Fichier:

PDF, 2.07 MB

english, 2020

44

Putative genome features of relic green alga-derived nuclei in dinoflagellates and future perspectives as model organisms

Nakayama, Takuro, Takahashi, Kazuya, Kamikawa, Ryoma, Iwataki, Mitsunori, Inagaki, Yuji, Tanifuji, Goro

Journal:

Communicative & Integrative Biology

Année:

2020

Fichier:

PDF, 969 KB

2020

45

Fine Structure Observation of Feeding Behavior, Nephroselmis spp.-derived Chloroplast Enlargement, and Mitotic Processes in the Katablepharid Hatena arenicola

Nomura, Mami, Kamikawa, Ryoma, Ishida, Ken-ichiro

Journal:

Année:

2020

Fichier:

PDF, 8.27 MB

2020

46

A non-photosynthetic green alga illuminates the reductive evolution of plastid electron transport systems

Kayama, Motoki, Chen, Jun-Feng, Nakada, Takashi, Nishimura, Yoshiki, Shikanai, Toshiharu, Azuma, Tomonori, Miyashita, Hideaki, Takaichi, Shinichi, Kashiyama, Yuichiro, Kamikawa, Ryoma

Journal:

Année:

2020

Fichier:

PDF, 2.03 MB

2020